Resources


    Education and Presentations


    Code, Web Applications, and Online Databases

    CancerCellNet: classify cancer models and tumor samples A single cell transcriptional atlas of early synovial joint development SingleCellNet: classify single cells across species and platforms Bulk sample CellNet The transcriptional landscape of hematopoietic stem cell ontogeny wuHMM: a robust algorithm to detect DNA copy number variation using long oligonucleotide microarray data. No longer updated or supported.

    Data

    • A single cell transcriptional atlas of early synovial joint development. Development. 2020 Jul 20;147(14):dev185777 GSE151985

    • A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo. Stem Cell Research. 2018 Aug;31:201-215. GSE114220

    • Deconstructing transcriptional heterogeneity in pluripotent stem cells. Nature. 2014 Dec 4;516(7529):56-61. GSE60749

    • Dissecting Engineered Cell Types and Enhancing Cell Fate Conversion via CellNet. Cell. 2014 Aug 14;158(4):889-902. GSE59037

    • The transcriptional landscape of hematopoietic stem cell ontogeny. Cell Stem Cell. 2012 Nov 2;11(5):701-14. StemSite and GSE37000

    • The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells. Nature Genetics. 2009 Apr;41(4):430-7. GSE10656

    • wuHMM: a robust algorithm to detect DNA copy number variation using long oligonucleotide microarray data. Nucleic Acids Research. 2008 Apr;36(7):e4. GSE10511